Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs1110661 chr22:18444734 C/T 3.58E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs1110662 chr22:18444908 G/A 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs1110666 chr22:18457720 A/C 3.33E-6 494 27.83 31.43 30.8 KM Plot
PRAD rs11107785 chr12:95305572 G/T 4.42E-6 493 30.97 31.23 19.2 KM Plot
PRAD rs11111876 chr12:104417713 C/A 1.15E-5 489 30.78 32.25 24.27 KM Plot
PRAD rs111319721 chr7:135060228 T/TACAC 3.69E-10 485 30.8 31.33 2.33 KM Plot
PRAD rs1113272 chr4:165646778 C/T 5.97E-5 490 30.75 32.15 44.32 KM Plot
PRAD rs1113273 chr4:165646684 G/A 5.68E-5 492 30.77 32.9 44.32 KM Plot
PRAD rs11136254 chr8:145158503 G/T 1.69E-5 482 19.1 30.57 31.13 KM Plot
PRAD rs11136359 chr8:1152506 A/T 3.21E-6 494 20.75 28.93 31.27 KM Plot
PRAD rs111427975 chr11:4100351 C/T 0.000126 489 31.27 29.98 28.73 KM Plot
PRAD rs111452679 chr1:1160163 G/A 3.05E-10 481 31.27 30.98 13.73 KM Plot
PRAD rs111456336 chr4:187812434 T/C 2.18E-6 481 31.23 28.3 26.8 KM Plot
PRAD rs11150805 chr17:79638805 C/T 6.14E-5 489 30.48 31.37 25.17 KM Plot
PRAD rs111514504 chr11:54796787 C/T 0 479 31.3 28.05 17.2 KM Plot